Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003593.1_1332_1889_R

Intron Information:

Intron Rank:

129236

Intron Class:

major

Intron Phase:

Intron Coordinates:

1332 - 1889

Intron Length:

558

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTATGGAGT

5'SS Class:

major

3'SS Sequence:

GCTCTACCAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

CAGAGCTGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

66.4

44.5

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

61.5

0.26

0.9

55.8

Minor 5ss

40.6

-1.1

3.2

57.5

46.9

Minor BPS

47.8

-0

62.79

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016733

Chromosome:

PEDO01003593.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036048

50 - 2097

2048