Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003612.1_3661_4188_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3661 - 4188

Intron Length:

528

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTAGC

5'SS Class:

major

3'SS Sequence:

CGCCGTGTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAT

U12 Branch Point Sequence:

GTTCCCCCAGCG

Flanking Amino Acid:

GSGFFGVLSDNRFGRRALLT

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

71.6

38.4

Major BPS

59.9

0.25

1.3

70.1

Major PPT

62.6

0.28

52.3

41.6

Minor 5ss

43.9

-0.7

2.5

54.2

37.2

Minor BPS

44.4

-0.5

2.1

55.5

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020768

Chromosome:

PEDO01003612.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018073

3080 - 5412

2333

ENSAPLT00000034579

3080 - 5396

2317