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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003612.1_4305_4672_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4305 - 4672
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCCTGGCCA
5'SS Class:
major
3'SS Sequence:
AACCCATCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
GGCCCCACAAAC
Flanking Amino Acid:
VIYCLCRFLGAPTPTPMGQT
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.3
50.7
39.8
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
66.3
0.37
0.9
55.3
39.5
Minor 5ss
21.8
-3.3
3.7
22.5
36.9
Minor BPS
43
-0.5
1.8
48.74
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020768
Chromosome:
PEDO01003612.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018073
3080 - 5412
2333