Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003614.1_1970_2289_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1970 - 2289

Intron Length:

320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCCCT

5'SS Class:

major

3'SS Sequence:

GTCTCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

GGTGTCTCACGG

Flanking Amino Acid:

RYFCRWNGSSGHGGCKLCPQ

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

1.2

66.3

45.2

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

78.7

0.65

0.8

69.6

36.8

Minor 5ss

46.1

-0.4

2.9

66.6

44.3

Minor BPS

-0.9

40.21

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017975

Chromosome:

PEDO01003614.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033881

376 - 3788

3413