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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003712.1_116_287_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116 - 287
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGGAG
U12 Branch Point Sequence:
CTCTCTGGAGCT
Flanking Amino Acid:
IRIGRAGHHPGIVASVSPPV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.03
0.9
89.2
28.7
Major BPS
44
-0.3
1.7
45
47.8
Major PPT
74.7
0.56
0.9
64.9
41.2
Minor 5ss
33.6
-1.9
4
51.2
45.7
Minor BPS
43.9
-0.3
2.3
63.99
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021749
Chromosome:
PEDO01003712.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036092
36 - 3694
3659