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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003751.1_1449_1604_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1449 - 1604
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCCGCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
TGGGTTTGAGCC
Flanking Amino Acid:
HYPLCCLPPPLIQACAMQQL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
69.1
0.43
0.8
61
29.2
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
44.5
-0.4
1.7
51.02
40.3

Associated Gene:

Gene:
RNF44
Ensembl Gene ID:
ENSAPLG00000022852
Chromosome:
PEDO01003751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044790
21 - 3615
3595
ENSAPLT00000040129
21 - 3615
3595
ENSAPLT00000021582
21 - 3615
3595