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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003751.1_1782_1945_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1782 - 1945
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CCCACCCTAACC
Flanking Amino Acid:
VPLQAQHPRMPLQRIDNDVD
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
61.4
44.7
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
78.5
0.64
0.7
70.1
30.8
Minor 5ss
28.3
-2.5
2.7
29.1
37
Minor BPS
52.4
0.05
1.8
59.67
45.4

Associated Gene:

Gene:
RNF44
Ensembl Gene ID:
ENSAPLG00000022852
Chromosome:
PEDO01003751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044790
21 - 3615
3595
ENSAPLT00000040129
21 - 3615
3595
ENSAPLT00000021582
21 - 3615
3595