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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003751.1_2527_2832_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2527 - 2832
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGGCTCTGACT
Flanking Amino Acid:
VDDVEMENYEVRRVLQRLRG
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
81.8
26.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73.5
0.53
0.7
65
30.7
Minor 5ss
42.5
-0.8
2.8
57.3
47.4
Minor BPS
49.2
0.02
1.8
67.05
44.4

Associated Gene:

Gene:
RNF44
Ensembl Gene ID:
ENSAPLG00000022852
Chromosome:
PEDO01003751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044790
21 - 3615
3595