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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003751.1_381_806_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
381 - 806
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CTTCCCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGGAT
U12 Branch Point Sequence:
CTTCCCCCAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
44
-0.3
1.4
37
40.7
Major PPT
72
0.5
0.8
67.1
27.8
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
45.7
-0.3
2.1
62.3
43.4

Associated Gene:

Gene:
RNF44
Ensembl Gene ID:
ENSAPLG00000022852
Chromosome:
PEDO01003751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044790
21 - 3615
3595