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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003801.1_1595_1808_F

Intron Information:

Intron Rank:
125022
Intron Class:
major
Intron Phase:
Intron Coordinates:
1595 - 1808
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGGGTC
5'SS Class:
major
3'SS Sequence:
TTTTGTGCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAC
U12 Branch Point Sequence:
TGTGACTCAGAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
59.1
40
Major BPS
51.9
0.05
1
50
35.5
Major PPT
82.8
0.74
0.9
77.3
37
Minor 5ss
26.8
-2.7
3.7
31.6
43.1
Minor BPS
42.4
-0.6
2
54.17
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017323
Chromosome:
PEDO01003801.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019265
979 - 2395
1417