Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003837.1_4733_4807_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4733 - 4807

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCG|GCCGGGAGA

5'SS Class:

major

3'SS Sequence:

ATGGTGAGGTGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCAGAT

U12 Branch Point Sequence:

AGGCGTACAAGC

Flanking Amino Acid:

YEEEVIYAYSEQHRGGGPAV

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.31

1.3

56.9

40.2

Major BPS

50.1

1.1

46.4

38.9

Major PPT

41.5

-0.4

1.7

40.1

47.5

Minor 5ss

15.8

-4

3.6

22.2

37.4

Minor BPS

33.2

-1.2

1.9

35.96

33.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019763

Chromosome:

PEDO01003837.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018382

4527 - 6418

1892