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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003861.1_1946_2239_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1946 - 2239
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CTTCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
GTCACCCCAGTC
Flanking Amino Acid:
DYTVSWYWIIIGLVIAMVAS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
67
40
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
78.4
0.64
0.7
73.1
25.1
Minor 5ss
35.7
-1.6
3
44.2
43.7
Minor BPS
41
-0.7
1.9
49.17
40.8

Associated Gene:

Gene:
SLC44A2
Ensembl Gene ID:
ENSAPLG00000009225
Chromosome:
PEDO01003861.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009669
1 - 3774
3774