Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003861.1_3218_3321_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3218 - 3321

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTCTG

5'SS Class:

major

3'SS Sequence:

TCCTTGTTCCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

GGTTCCCCACCT

Flanking Amino Acid:

LLEFQCPTTQICVSKCPDRF

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

67.2

43.7

Major BPS

58.9

0.22

49.8

35.1

Major PPT

67.9

0.4

66.4

38.6

Minor 5ss

-0.7

2.8

58.7

45.8

Minor BPS

47.6

-0.1

2.1

71.07

Associated Gene:

Gene:

SLC44A2

Ensembl Gene ID:

ENSAPLG00000009225

Chromosome:

PEDO01003861.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009669

1 - 3774

3774