Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003873.1_4479_4564_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4479 - 4564

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

CTCGCCCTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTTAC

U12 Branch Point Sequence:

CTCAGCTTACCC

Flanking Amino Acid:

GMVDYALESAGASVINTRCS

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

64.7

Major BPS

57.6

0.19

1.1

49.1

37.7

Major PPT

61.3

0.25

54.1

36.6

Minor 5ss

31.2

-2.1

3.4

34.3

Minor BPS

47.4

-0.2

2.1

58.43

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019982

Chromosome:

PEDO01003873.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017256

3432 - 5395

1964