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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003899.1_275_2283_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
275 - 2283
Intron Length:
2009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ACTTCTTTACTT
Flanking Amino Acid:
LQGLAVLAKERPPNPIEFLA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.4
0.95
0.6
87.4
23.1
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
65.1
0.55
1.6
77.48
40

Associated Gene:

Gene:
DPY30
Ensembl Gene ID:
ENSAPLG00000006041
Chromosome:
PEDO01003899.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006255
21 - 2514
2494