Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003908.1_1133_1393_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1133 - 1393

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGGGAGAG

5'SS Class:

weak_major

3'SS Sequence:

TTTCCATGGGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTTTTTCCATG

Flanking Amino Acid:

VEAATQRARDGTAAGFVPLR

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.9

0.21

1.3

40.4

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

48.6

-0

1.8

58.2

42.1

Minor 5ss

24.3

-3

3.4

27.4

37.3

Minor BPS

48.4

-0.2

62.38

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008522

Chromosome:

PEDO01003908.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008852

93 - 1531

1439