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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003914.1_2297_2375_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2297 - 2375
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTGAT
U12 Branch Point Sequence:
TGATGCCCACCC
Flanking Amino Acid:
VLDCKDSVIKSLVTDVEEAE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
50.9
0.02
1.4
45
47.8
Major PPT
68
0.41
0.9
60.6
29.4
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
39.8
-0.7
2.3
53.21
43.8

Associated Gene:

Gene:
CCDC65
Ensembl Gene ID:
ENSAPLG00000003175
Chromosome:
PEDO01003914.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003216
592 - 2555
1964