Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003919.1_1156_1227_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1156 - 1227

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAGGTGGT

5'SS Class:

major

3'SS Sequence:

CTGCTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

TGCTCCCCAACG

Flanking Amino Acid:

GHRHRDAKHSKDTRAASQWP

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

69.9

41.1

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

71.5

0.49

0.9

65.5

36.1

Minor 5ss

34.7

-1.7

3.6

48.4

42.3

Minor BPS

51.2

-0.1

61.5

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030720

Chromosome:

PEDO01003919.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037381

21 - 2055

2035