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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003923.1_1101_1980_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1101 - 1980

Intron Length:

880

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCCCTGTCT

5'SS Class:

major

3'SS Sequence:

TGGGAACTCACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACGGAA

U12 Branch Point Sequence:

GCTCTGGGAACT

Flanking Amino Acid:

VPIFLLPFTQVSLVAPGFVR

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.2

57.1

41.7

Major BPS

44.9

-0.3

1.2

38.7

32.3

Major PPT

59.8

0.22

50.5

42.8

Minor 5ss

23.5

-3.1

4.1

40.1

45.5

Minor BPS

39.1

-0.7

2.5

58.31

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028318

Chromosome:

PEDO01003923.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024718

182 - 3511

3330