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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003927.1_2054_2461_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2054 - 2461
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATGGCCCCATAT
Flanking Amino Acid:
KKEKGYYVAPGSNPSV*
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
39.8
-0.7
2.1
56.78
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022164
Chromosome:
PEDO01003927.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021879
21 - 2666
2646