Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003944.1_170_687_R

Intron Information:

Intron Rank:

146413

Intron Class:

major

Intron Phase:

Intron Coordinates:

170 - 687

Intron Length:

518

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGCCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAGAAA

U12 Branch Point Sequence:

TTGGCCCCACTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

71.2

34.5

Major BPS

48.4

-0.1

1.4

56.3

37.2

Major PPT

66.5

0.37

64.2

Minor 5ss

26.8

-2.7

2.9

32.6

42.4

Minor BPS

42.6

-0.5

2.1

55.83

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026120

Chromosome:

PEDO01003944.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031066

98 - 1023

926

ENSAPLT00000018863

21 - 1023

1003