Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003951.1_18160_18357_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18160 - 18357

Intron Length:

198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTATGTATT

5'SS Class:

major

3'SS Sequence:

CCCGGGGTTTTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGATAAC

U12 Branch Point Sequence:

CCCCCCTCGAAG

Flanking Amino Acid:

FSFQKKKKKGTADSVLLSAV

Intron Amino Acid Position:

529

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

34.3

Major BPS

-0.1

1.3

49.7

42.2

Major PPT

58.1

0.18

52.8

41.6

Minor 5ss

49.6

-0

2.5

70.2

34.8

Minor BPS

43.9

-0.6

1.7

41.2

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028753

Chromosome:

PEDO01003951.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032549

14836 - 18758

3923