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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003951.1_41366_42182_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41366 - 42182
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GGGCTCTAATGT
Flanking Amino Acid:
QGGHYGSGGDRYDSYESYDS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
39.7
-0.7
2
50.07
43.6

Associated Gene:

Gene:
AKAP8L
Ensembl Gene ID:
ENSAPLG00000013599
Chromosome:
PEDO01003951.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014181
38789 - 48527
9739