Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003951.1_43436_43768_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43436 - 43768

Intron Length:

333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

TGTTGCATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

ATGGCCTTAACA

Flanking Amino Acid:

EKEEKEGSRGEGEDDEGRDS

Intron Amino Acid Position:

321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.1

74.4

36.1

Major BPS

0.52

1.1

77.7

35.3

Major PPT

74.4

0.55

0.9

71.1

39.6

Minor 5ss

-1.4

2.8

46.6

41.8

Minor BPS

75.5

0.8

1.4

77.65

39.3

Associated Gene:

Gene:

AKAP8L

Ensembl Gene ID:

ENSAPLG00000013599

Chromosome:

PEDO01003951.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014181

38789 - 48527

9739