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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003951.1_45676_46110_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45676 - 46110
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
AAGGACTTAACA
Flanking Amino Acid:
LPQQTADFLQEYVANKTRKT
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
79.3
0.66
0.8
72
32.7
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
58.6
0.27
1.6
64.11
41.8

Associated Gene:

Gene:
AKAP8L
Ensembl Gene ID:
ENSAPLG00000013599
Chromosome:
PEDO01003951.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014181
38789 - 48527
9739