Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003951.1_46217_46383_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46217 - 46383

Intron Length:

167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAC

U12 Branch Point Sequence:

TCTGGCTTAACA

Flanking Amino Acid:

QIYRDQDLTQDVGMEHFIKK

Intron Amino Acid Position:

452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

61.1

0.28

1.1

69.4

35.9

Major PPT

84.7

0.78

0.7

76.3

32.3

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

64.7

0.46

1.9

74.7

43.3

Associated Gene:

Gene:

AKAP8L

Ensembl Gene ID:

ENSAPLG00000013599

Chromosome:

PEDO01003951.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014181

38789 - 48527

9739