About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003994.1_1469_1677_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1469 - 1677
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCATT
Flanking Amino Acid:
EVLAKTMVGQGKTVIQAEID
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.7
0.51
0.9
68.7
31.7
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
59.4
0.38
2
84.39
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010670
Chromosome:
PEDO01003994.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011155
583 - 3570
2988