Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004061.1_1937_3753_R

Intron Information:

Intron Rank:

150003

Intron Class:

major

Intron Phase:

Intron Coordinates:

1937 - 3753

Intron Length:

1817

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTATTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TCTCTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

69.9

40.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

88.9

0.87

0.7

81.1

35.5

Minor 5ss

34.4

-1.8

45.5

42.5

Minor BPS

56.7

0.29

1.6

72.13

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028252

Chromosome:

PEDO01004061.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044628

1880 - 6158

4279