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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004088.1_1581_1787_R

Intron Information:

Intron Rank:
148309
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1581 - 1787
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
GTG|GTCATTGGG
5'SS Class:
major
3'SS Sequence:
GGGCTTCTCTGTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCCACCAGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.4
52.6
44.5
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
31.3
-1
3.3
50
43.8
Minor 5ss
27.7
-2.6
2.9
29.8
37.6
Minor BPS
44.5
-0.3
2
62.41
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027154
Chromosome:
PEDO01004088.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025210
1244 - 2275
1032