Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004094.1_1943_2170_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1943 - 2170

Intron Length:

228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTGGA

5'SS Class:

major

3'SS Sequence:

TGTCTGCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TAATCTGCAGCT

Flanking Amino Acid:

DEDVNKQLDKMGYNIGVRLI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

70.5

35.4

Major BPS

82.2

0.8

0.9

81.6

Major PPT

75.2

0.57

0.9

68.4

37.5

Minor 5ss

-2.4

3.1

35.6

41.4

Minor BPS

44.4

-0.3

2.3

66.35

44.1

Associated Gene:

Gene:

TRAPPC3

Ensembl Gene ID:

ENSAPLG00000018836

Chromosome:

PEDO01004094.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040985

392 - 2530

2139