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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004101.1_2023_2229_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2023 - 2229
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCACCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CACCCCTCACCC
Flanking Amino Acid:
ESFEKQFRQEMAKIYGSVPG
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
66.3
0.37
1
61.3
34.8
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
46.7
-0.2
1.9
53.14
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005974
Chromosome:
PEDO01004101.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006179
164 - 3248
3085