Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004113.1_4342_4559_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4342 - 4559

Intron Length:

218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCAGG

5'SS Class:

major

3'SS Sequence:

CCCTCCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAT

U12 Branch Point Sequence:

TTGTCTGGAAAT

Flanking Amino Acid:

DITDEKFKLAMSQKVSGLLE

Intron Amino Acid Position:

430

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

47.6

Major BPS

0.45

57.8

Major PPT

75.8

0.58

0.7

24.8

Minor 5ss

39.3

-1.2

2.9

49.6

46.4

Minor BPS

48.7

-0

2.2

73.83

Associated Gene:

Gene:

FTCD

Ensembl Gene ID:

ENSAPLG00000015898

Chromosome:

PEDO01004113.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016598

235 - 6273

6039

ENSAPLT00000023461

21 - 5646

5626