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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004113.1_5574_5905_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
5574 - 5905
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GAGTGCTGACTG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65
42.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
32.9
-2
2.8
31.3
42.6
Minor BPS
41.3
-0.8
2
41.88
43

Associated Gene:

Gene:
FTCD
Ensembl Gene ID:
ENSAPLG00000015898
Chromosome:
PEDO01004113.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016598
235 - 6273
6039