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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004113.1_756_919_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
756 - 919
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
CTGCCCACCACC
Flanking Amino Acid:
AGEYEALPEKLKKPEWAPDF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
76.7
0.6
0.8
68.1
32
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
42.3
-0.6
2.1
52.99
44.2

Associated Gene:

Gene:
FTCD
Ensembl Gene ID:
ENSAPLG00000015898
Chromosome:
PEDO01004113.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016598
235 - 6273
6039
ENSAPLT00000023461
21 - 5646
5626