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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004130.1_1046_1273_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1046 - 1273
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
GGTGGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAGAC
U12 Branch Point Sequence:
GCATCCAGACCC
Flanking Amino Acid:
ELLLSMADFELLKTTLTGSR
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
51.6
0.04
1.1
48.6
36.6
Major PPT
60.2
0.23
1
51
39.3
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
44.8
-0.4
2
54.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022522
Chromosome:
PEDO01004130.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042632
21 - 3718
3698