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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_1065_1728_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1065 - 1728
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
CATTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CTGTCCCTCATT
Flanking Amino Acid:
TLWGRYNQSRGSHTLQLMYG
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
35.2
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
76.7
0.6
1
72.9
41.9
Minor 5ss
24.8
-2.9
3
22.4
37
Minor BPS
50.3
0.09
2.1
72.05
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030106
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036638
21 - 3275
3255