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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_110535_110646_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
110535 - 110646
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCGTCTACT
5'SS Class:
weak_major
3'SS Sequence:
CTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACTC
Flanking Amino Acid:
MVLGLGFFLTGYTPLPGDNY
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.4
63.2
42.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
33.8
-1.8
3.8
43
44.2
Minor BPS
43.7
-0.4
2.1
53.52
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018924
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045672
110464 - 111445
982