Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_117204_117838_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117204 - 117838

Intron Length:

635

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCAGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTCAA

U12 Branch Point Sequence:

CTTCCCCCAGCC

Flanking Amino Acid:

DEAIVQLEVSGANPHLSLGS

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

1.1

71.7

38.6

Major BPS

0.23

1.1

61.4

36.2

Major PPT

60.6

0.24

0.9

52.5

Minor 5ss

29.4

-2.4

2.9

40.7

Minor BPS

45.5

-0.3

2.1

61.3

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024328

Chromosome:

PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038421

116174 - 120837

4664