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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_131259_131334_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
131259 - 131334
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACTC
Flanking Amino Acid:
YRFRARPPTPGYTPLPGDNY
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.7
34.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
31.4
-2.1
3.2
35.2
41.4
Minor BPS
43.7
-0.4
2.1
53.52
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018555
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020031
121596 - 132238
10643