Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_136546_136620_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

136546 - 136620

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTCTGTTTT

5'SS Class:

weak_major

3'SS Sequence:

ACCTTGGAACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTGGAA

U12 Branch Point Sequence:

CACCTTGGAACA

Flanking Amino Acid:

ANSTVYKLHKCCIIPVMGCV

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.5

0.11

1.4

64.4

42.3

Major BPS

49.9

-0

1.4

52.7

43.2

Major PPT

47.7

-0.1

1.2

42.2

Minor 5ss

49.6

-0

2.5

42.8

Minor BPS

-0.6

1.9

45.7

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029809

Chromosome:

PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001734

133034 - 136781

3748