Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_150851_152831_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

150851 - 152831

Intron Length:

1981

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

ATCCCTGCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

TCACCCACCACT

Flanking Amino Acid:

WEWEPSLQHSAQLQVRIIPA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.9

76.1

36.4

Major BPS

61.3

0.28

52.7

34.2

Major PPT

71.5

0.48

0.9

61.8

39.3

Minor 5ss

20.3

-3.4

3.9

30.3

43.5

Minor BPS

44.1

-0.3

2.2

63.85

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027589

Chromosome:

PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024636

150360 - 153138

2779