About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_16066_16194_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16066 - 16194
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATG
5'SS Class:
major
3'SS Sequence:
TGCCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
GGAAATGCAGCT
Flanking Amino Acid:
QERESSLHIAAPFFHNAQRW
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
69
41.8
Major BPS
52
0.05
1.3
59
44.6
Major PPT
81.3
0.7
0.8
79.7
32.2
Minor 5ss
35.4
-1.7
3.3
48.6
47.1
Minor BPS
33.1
-1.2
2.1
44.79
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027052
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004418
14313 - 137729
123417
ENSAPLT00000031181
14313 - 150685
136373
ENSAPLT00000028456
14313 - 137729
123417