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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_16300_29175_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16300 - 29175
Intron Length:
12876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACCA
Flanking Amino Acid:
GLGVYLFRKQAAQSRELVRK
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
45.6
-0.3
2.2
58.78
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027052
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031181
14313 - 150685
136373
ENSAPLT00000028456
14313 - 137729
123417
ENSAPLT00000004418
14313 - 137729
123417