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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_2734_2842_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2734 - 2842
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCTTGGCT
Flanking Amino Acid:
KKGKGYNVAPGSDGGSNSSN
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
48
-0
3.5
84.21
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030106
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036638
21 - 3275
3255