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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_37281_37545_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37281 - 37545
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACCA
Flanking Amino Acid:
GLGVYLFRKQVAQSRELAAK
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
45.6
-0.3
2.2
58.78
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027052
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035100
34890 - 109952
75063
ENSAPLT00000029582
14313 - 109952
95640
ENSAPLT00000017729
14313 - 138143
123831