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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004173.1_5659_5729_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5659 - 5729
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
CCTGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
ACATCCCCACTC
Flanking Amino Acid:
EKAIFLLIRRALQLAVQALV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
79.5
0.66
0.8
72.8
32
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
42.7
-0.5
2
50.55
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015298
Chromosome:
PEDO01004173.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015988
4210 - 7132
2923