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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_28245_30640_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28245 - 30640
Intron Length:
2396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TATCCCAGGCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CATCCCTGCACT
Flanking Amino Acid:
LIGRESPPPSCLLFLHIPFL
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
58.6
0.2
1.1
51.5
42.3
Minor 5ss
41
-1
3
59.3
39
Minor BPS
51.8
0.14
2
71.78
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002516
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019675
28077 - 49362
21286