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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_33966_34714_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33966 - 34714
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGATCAGGAAAC
Flanking Amino Acid:
ALVDCRSLHLDYVQALTGFC
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
42.1
-0.6
2.3
56.08
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002516
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022875
21143 - 48071
26929
ENSAPLT00000041043
22869 - 48071
25203
ENSAPLT00000019675
28077 - 49362
21286
ENSAPLT00000040994
22905 - 49362
26458
ENSAPLT00000002562
28352 - 49362
21011
ENSAPLT00000029151
27048 - 49362
22315
ENSAPLT00000028941
22905 - 49362
26458