About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_36264_43940_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36264 - 43940
Intron Length:
7677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
CCCAGTATGACT
Flanking Amino Acid:
VVEDNAVLSADTLRYYITCS
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
41.2
-0.6
2
51.8
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002516
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029151
27048 - 49362
22315
ENSAPLT00000022875
21143 - 48071
26929
ENSAPLT00000002562
28352 - 49362
21011
ENSAPLT00000041043
22869 - 48071
25203