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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_44017_44376_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44017 - 44376
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTGTCTTGTCT
Flanking Amino Acid:
SLGLELAVAVGSSDFCINPD
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
68.5
0.42
0.9
61.8
39.9
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
46.7
-0.1
3.5
82.19
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002516
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002562
28352 - 49362
21011
ENSAPLT00000029151
27048 - 49362
22315
ENSAPLT00000028941
22905 - 49362
26458
ENSAPLT00000022875
21143 - 48071
26929
ENSAPLT00000041043
22869 - 48071
25203
ENSAPLT00000019675
28077 - 49362
21286
ENSAPLT00000040994
22905 - 49362
26458